PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G12550.1
Common NameLOC102710323
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 246aa    MW: 26957.8 Da    PI: 5.2232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G12550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-1077125354
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   +++  rE+ RRd++N++f eL + l +    +  K +Ka+iL  A++ + +L
  OB08G12550.1  77 TSKACREKIRRDKMNDRFLELGTTLEPG---KPVKSDKAAILSDATRMVIQL 125
                   67889**********************9...99*************988777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1272143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.16374125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.23E-875128No hitNo description
PfamPF000101.3E-777125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1277148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-880131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00262141172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMSVPPESGG GGGDEWFLDC GILEDLPAAA CGAFPWDASP SCSNPSVEVS SFVNTSDALK  60
EPGSNKRVRS GSCGRPTSKA CREKIRRDKM NDRFLELGTT LEPGKPVKSD KAAILSDATR  120
MVIQLRAEAK QLKDTNESLE DKIKELKAEK DELRDEKQKL KVEKETLEQQ MKIMTSTPAY  180
MPHPTLMPAP FPQAPLAPFH PAQGQQAAGQ KLMMPFVGYP GYPMWQFMPP SEVDTSKDNE  240
SCPPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029510.0AK102951.1 Oryza sativa Japonica Group cDNA clone:J033115D14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659812.10.0PREDICTED: transcription factor ILR3-like
SwissprotQ9FH377e-73ILR3_ARATH; Transcription factor ILR3
TrEMBLJ3MQ760.0J3MQ76_ORYBR; Uncharacterized protein
STRINGOB08G12550.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-70bHLH family protein